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SGN-6206 GENOMIC SIGNAL PROCESSING, 5 cr
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Person responsible
Prof. Ioan Tabus
Lecturers
Ioan Tabus, Professor, room TF414, ioan.tabus@tut.fi
Lecture room and time
Per III: Wednesday 10 - 12, TB215
Per III: Thursday 14 - 16, TC131
Implementation rounds
Implementation 1
| Period 1 | Period 2 | Period 3 | Period 4 | Period 5 | Summer | Language of instruction | |
| Lecture | - | - | 4 h/week | - | - | - | In English only |
| Exercise | - | - | 2 h/week | - | - | - | In English only |
| Exam | In English only | ||||||
Objectives
The student will learn several classes of problems arising in genomics and related bioinformatic fields, where signal processing algorithms have been show to play an important role.
Requirements for completing the course
Project work and final examination.
Assessment criteria
Course is graded on the basis of answers to exam questions. Very good grade is obtained when exam questions are correctly answered and homework is accepted. Course acceptance threshold is approx. half of the maximum exam points.
Study material
| Type | Name | Author | ISBN | URL, edition, availablitity... | Exam material | Language |
| Book | "Genomic Signal Processing and Statistics" | Edited by: EDWARD R. DOUGHERTY, ILYA SHMULEVICH, JIE CHEN, and Z. JANE WANG | http://spc.hindawi.com/gsps.html | No | English | |
| Book | "Biological sequence analysis – Probabilistic models of proteins and nucleic acids" | R. Durbin, S. Eddy, A.Krogh, G. Mitchison | Cambridge University Press, 2001 | No | English | |
| Lecture slides | "Genomic Signal Processing" | Ioan Tabus | Yes | English |
Prerequisites
| Number | Name | Credits | M/R |
| SGN-1200 | Signal Processing Methods | 4 | Recommendable |
Other comments
| Last modified | 02.02.2005 |
| Modified by | Antti Niemistö |