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Archived Curricula Guide 2009–2010
Curricula Guide is archieved. Please refer to current Curricula Guides
BIOI4200 Expression data analysis 4 ECTS
Organised by
Bioinformatics
Person in charge
Bairong Shen
Preceding studies
Recommended:
Corresponding course units in the curriculum
Institute of Medical Technology
Curricula 2008 – 2009
BIOI4200 Expression data analysis 4 ECTS

Learning outcomes

The goal of this course is to introduce statistical concepts and tools to analyze expression data. The expression data will be analyzed using the R language.

Contents

Introduction to the microarray technology; Introduction to data analysis with R; Primary (or “low-level") analysis of data; Dimension reduction, clustering & visualization; Promoter identification & microarray annotation; Integrated analyses: BioOntologies & reverse engineering; Bioconductor packages and expression data analysis.

Teaching methods

Teaching method Contact Online
Lectures 20 h 0 h

Lectures (appr.20 h) and practical training, Journal club.

Teaching language

English

Modes of study

Lectures (approx.20 h), Practical training, Journal Club

Evaluation

Numeric 1-5.

Recommended year of study

2. year autumn

Study materials

eBook (http://www.csc.fi/csc/julkaisut/oppaat/arraybook_overview)

Further information

Organization responsible: Tampere IMT
An alternative course SGN-6176 Microarray Data Analysis 5 ECTS is arranged by the Technical University of Tampere. Please note that in order to enrol on the course you have to fill in the JOO-application. More information about the enrolment etc. from Martti Tolvanen or Riitta Aallos.

Belongs to following study modules

Institute of Medical Technology
Bioinformatiikan pääaineopinnot (Bioinformatics)
Institute of Medical Technology
Bioinformatics (Biochemistry)
2010–2011
Teaching
Archived Teaching Schedule. Please refer to current Teaching Shedule.
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Institute of Medical Technology