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Archived Curricula Guide 2008–2009
Curricula Guide is archieved. Please refer to current Curricula Guides
BIOI4200 Expression data analysis 4 ECTS
Organised by
Bioinformatics
Person in charge
Bairong Shen
Planned organizing times
Period(s) I II III IV
2008–2009 X
Preceding studies
Recommended:

Learning outcomes

The goal of this course is to introduce statistical concepts and tools to analyze expression data. The expression data will be analyzed using the R language.

Contents

Introduction to the microarray technology; Introduction to data analysis with R; Primary (or “low-level") analysis of data; Dimension reduction, clustering & visualization; Promoter identification & microarray annotation; Integrated analyses: BioOntologies & reverse engineering; Bioconductor packages and expression data analysis.

Teaching methods

Teaching method Contact Online
Lectures 20 h 0 h

Lectures (appr.20 h) and practical training, Journal club.

Teaching language

English

Modes of study

Lectures (approx.20 h), Practical training, Journal Club

Evaluation

Numeric 1-5.

Recommended year of study

2. year autumn

Study materials

eBook (http://www.csc.fi/csc/julkaisut/oppaat/arraybook_overview)

Further information

Organization responsible: Tampere IMT

Belongs to following study modules

Institute of Medical Technology
Bioinformatiikan pääaineopinnot (Bioinformatics)
2008–2009
Teaching
Archived Teaching Schedule. Please refer to current Teaching Shedule.
Period I Period II Period III Period IV
BIOI4200 Expression data analysis
Period I Period II Period III Period IV
BIOI4200 Expression data analysis
Institute of Medical Technology